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COVID-19 Open Research Dataset

Alternate Titles(s): CORD-19

UID: 39

Description
The COVID-19 Open Research Dataset is an extensive machine-readable resource of over 45,000 scholarly articles, including over 33,000 with full text, about COVID-19 and the coronavirus family of viruses for use by the global research community. This dataset is intended to mobilize researchers to apply recent advances in natural language processing to generate new insights in support of the fight against this infectious disease. The dataset is updated weekly and contains all COVID-19 and coronavirus-related research (e.g., SARS, MERS) from the following sources: PubMed's PMC open access corpus (using this query: COVID-19 and coronavirus research), additional COVID-19 research articles from a corpus maintained by the World Health Organization (WHO), and bioRxiv and medRxiv pre-prints (using this query: COVID-19 and coronavirus research). Also available is a comprehensive metadata file of 44,000 coronavirus and COVID-19 research articles with links to PubMed, Microsoft Academic, and the WHO COVID-19 database of publications (includes articles without open access full text).
Publisher
Allen Institute for Artificial Intelligence
Timeframe
1970 - Present
Subject Domain
COVID-19
Medicine & Health
Keywords
Coronavirus
Pandemics
Access via Semantic Scholar

Access Restrictions
Free to all
Access Instructions
By downloading this dataset you are agreeing to the COVID Dataset License Agreement. Specific licensing information for individual articles in the dataset is available in the metadata file.
Dataset Format(s)
CSV, JSON
Warning: file_put_contents(): Only 0 of 114502 bytes written, possibly out of free disk space (500 Internal Server Error)
Exception detected!

Warning: file_put_contents(): Only 0 of 114502 bytes written, possibly out of free disk space

500 Internal Server Error - ContextErrorException

Stack Trace

  1. in vendor/symfony/symfony/src/Symfony/Component/HttpKernel/Profiler/FileProfilerStorage.php at line 167  -
    1.             'time' => $profile->getTime(),
    2.         );
    4.         if (false === file_put_contents($file, serialize($data))) {
    5.             return false;
    6.         }
  2. at ErrorHandler ->handleError ('2', 'file_put_contents(): Only 0 of 114502 bytes written, possibly out of free disk space', '/var/www/html/data-catalog/vendor/symfony/symfony/src/Symfony/Component/HttpKernel/Profiler/FileProfilerStorage.php', '167', array('profile' => object(Profile), 'file' => '/var/www/html/data-catalog/app/cache/prod/profiler/6f/85/e4856f', 'profileIndexed' => false, 'dir' => '/var/www/html/data-catalog/app/cache/prod/profiler/6f/85', 'profileToken' => 'e4856f', 'parentToken' => null, 'childrenToken' => array(), 'data' => array('token' => 'e4856f', 'parent' => null, 'children' => array(), 'data' => array('request' => object(RequestDataCollector), 'time' => object(TimeDataCollector), 'memory' => object(MemoryDataCollector), 'ajax' => object(AjaxDataCollector), 'form' => object(FormDataCollector), 'exception' => object(ExceptionDataCollector), 'logger' => object(LoggerDataCollector), 'events' => object(EventDataCollector), 'router' => object(RouterDataCollector), 'security' => object(SecurityDataCollector), 'twig' => object(TwigDataCollector), 'swiftmailer' => object(MessageDataCollector), 'db' => object(DoctrineDataCollector), 'config' => object(ConfigDataCollector)), 'ip' => '18.216.167.229', 'method' => 'GET', 'url' => 'https://datacatalog.library.wayne.edu/dataset/covid-19-open-research-dataset', 'time' => '1734840912')))
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ORDER BY t0.publisher_name ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00031113624572753906;s:11:"explainable";b:1;}i:8;a:5:{s:3:"sql";s:310:"SELECT t0.location_id AS location_id_1, t0.data_location AS data_location_2, t0.location_content AS location_content_3, t0.data_access_url AS data_access_url_4, t0.accession_number AS accession_number_5, t0.datasets_dataset_uid AS datasets_dataset_uid_6 FROM data_locations t0 WHERE t0.datasets_dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00018596649169921875;s:11:"explainable";b:1;}i:9;a:5:{s:3:"sql";s:427:"SELECT t0.person_id AS person_id_1, t0.full_name AS full_name_2, t0.slug AS slug_3, t0.last_name AS last_name_4, t0.first_name AS first_name_5, t0.kid AS kid_6, t0.orcid_id AS orcid_id_7, t0.bio_url AS bio_url_8, t0.email AS email_9 FROM person t0 INNER JOIN datasets_corresponding_authors ON t0.person_id = datasets_corresponding_authors.person_id WHERE datasets_corresponding_authors.dataset_uid = ? ORDER BY t0.full_name ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00022792816162109375;s:11:"explainable";b:1;}i:10;a:5:{s:3:"sql";s:457:"SELECT t0.area_detail_id AS area_detail_id_1, t0.geographic_area_detail_name AS geographic_area_detail_name_2, t0.geographic_area_detail_authority AS geographic_area_detail_authority_3, t0.slug AS slug_4 FROM subject_geographic_area_details t0 INNER JOIN datasets_geographic_area_details ON t0.area_detail_id = datasets_geographic_area_details.area_detail_id WHERE datasets_geographic_area_details.dataset_uid = ? ORDER BY t0.geographic_area_detail_name ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00023889541625976562;s:11:"explainable";b:1;}i:11;a:5:{s:3:"sql";s:385:"SELECT t0.person_id AS person_id_1, t0.full_name AS full_name_2, t0.slug AS slug_3, t0.last_name AS last_name_4, t0.first_name AS first_name_5, t0.kid AS kid_6, t0.orcid_id AS orcid_id_7, t0.bio_url AS bio_url_8, t0.email AS email_9 FROM person t0 INNER JOIN datasets_experts ON t0.person_id = datasets_experts.person_id WHERE datasets_experts.dataset_uid = ? ORDER BY t0.full_name ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00021004676818847656;s:11:"explainable";b:1;}i:12;a:5:{s:3:"sql";s:358:"SELECT t0.subject_of_study_id AS subject_of_study_id_1, t0.subject_of_study AS subject_of_study_2, t0.species AS species_3, t0.slug AS slug_4 FROM subject_of_study t0 INNER JOIN datasets_subject_of_study ON t0.subject_of_study_id = datasets_subject_of_study.subject_of_study_id WHERE datasets_subject_of_study.dataset_uid = ? ORDER BY t0.subject_of_study ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00022196769714355469;s:11:"explainable";b:1;}i:13;a:5:{s:3:"sql";s:344:"SELECT t0.subject_domain_id AS subject_domain_id_1, t0.subject_domain AS subject_domain_2, t0.mesh_code AS mesh_code_3, t0.slug AS slug_4 FROM subject_domains t0 INNER JOIN datasets_subject_domains ON t0.subject_domain_id = datasets_subject_domains.subject_domain_id WHERE datasets_subject_domains.dataset_uid = ? ORDER BY t0.subject_domain ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00023698806762695312;s:11:"explainable";b:1;}i:14;a:5:{s:3:"sql";s:221:"SELECT t0.pop_age_id AS pop_age_id_1, t0.age_group AS age_group_2, t0.slug AS slug_3 FROM subject_population_ages t0 INNER JOIN datasets_ages ON t0.pop_age_id = datasets_ages.pop_age_id WHERE datasets_ages.dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00021100044250488281;s:11:"explainable";b:1;}i:15;a:5:{s:3:"sql";s:228:"SELECT t0.gender_id AS gender_id_1, t0.subject_gender AS subject_gender_2, t0.slug AS slug_3 FROM subject_genders t0 INNER JOIN datasets_genders ON t0.gender_id = datasets_genders.gender_id WHERE datasets_genders.dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00022006034851074219;s:11:"explainable";b:1;}i:16;a:5:{s:3:"sql";s:282:"SELECT t0.restriction_id AS restriction_id_1, t0.restriction AS restriction_2, t0.slug AS slug_3 FROM access_restrictions t0 INNER JOIN datasets_access_restrictions ON t0.restriction_id = datasets_access_restrictions.restriction_id WHERE datasets_access_restrictions.dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00021982192993164062;s:11:"explainable";b:1;}i:17;a:5:{s:3:"sql";s:234:"SELECT t0.data_type_id AS data_type_id_1, t0.data_type AS data_type_2, t0.slug AS slug_3 FROM data_types t0 INNER JOIN datasets_data_types ON t0.data_type_id = datasets_data_types.data_type_id WHERE datasets_data_types.dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00023508071899414062;s:11:"explainable";b:1;}i:18;a:5:{s:3:"sql";s:434:"SELECT t0.related_equipment_id AS related_equipment_id_1, t0.related_equipment AS related_equipment_2, t0.equipment_description AS equipment_description_3, t0.equipment_url AS equipment_url_4, t0.slug AS slug_5 FROM related_equipment t0 INNER JOIN datasets_related_equipment ON t0.related_equipment_id = datasets_related_equipment.related_equipment_id WHERE datasets_related_equipment.dataset_uid = ? ORDER BY t0.related_equipment ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00027108192443847656;s:11:"explainable";b:1;}i:19;a:5:{s:3:"sql";s:410:"SELECT t0.related_software_id AS related_software_id_1, t0.software_name AS software_name_2, t0.software_description AS software_description_3, t0.software_url AS software_url_4, t0.slug AS slug_5 FROM related_software t0 INNER JOIN datasets_related_software ON t0.related_software_id = datasets_related_software.related_software_id WHERE datasets_related_software.dataset_uid = ? ORDER BY t0.software_name ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00026798248291015625;s:11:"explainable";b:1;}i:20;a:5:{s:3:"sql";s:271:"SELECT t0.study_type_id AS study_type_id_1, t0.study_type AS study_type_2, t0.slug AS slug_3 FROM study_types t0 INNER JOIN datasets_study_types ON t0.study_type_id = datasets_study_types.study_type_id WHERE datasets_study_types.dataset_uid = ? ORDER BY t0.study_type ASC";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00018191337585449219;s:11:"explainable";b:1;}i:21;a:5:{s:3:"sql";s:282:"SELECT t0.other_resource_id AS other_resource_id_1, t0.resource_name AS resource_name_2, t0.resource_description AS resource_description_3, t0.resource_url AS resource_url_4, t0.datasets_dataset_uid AS datasets_dataset_uid_5 FROM other_resources t0 WHERE t0.datasets_dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00016117095947265625;s:11:"explainable";b:1;}i:22;a:5:{s:3:"sql";s:308:"SELECT t0.relationship_id AS relationship_id_1, t0.relationship_attributes AS relationship_attributes_2, t0.relationship_notes AS relationship_notes_3, t0.related_dataset_uid AS related_dataset_uid_4, t0.parent_dataset_uid AS parent_dataset_uid_5 FROM dataset_relationships t0 WHERE t0.parent_dataset_uid = ?";s:6:"params";a:1:{i:0;i:39;}s:5:"types";a:1:{i:0;i:1;}s:11:"executionMS";d:0.00013399124145507812;s:11:"explainable";b:1;}}}s:11:"connections";a:1:{s:7:"default";s:32:"doctrine.dbal.default_connection";}s:8:"managers";a:1:{s:7:"default";s:35:"doctrine.orm.default_entity_manager";}s:8:"entities";a:1:{s:7:"default";a:25:{s:24:"AppBundle\Entity\Dataset";s:24:"AppBundle\Entity\Dataset";s:30:"AppBundle\Entity\DatasetFormat";s:30:"AppBundle\Entity\DatasetFormat";s:22:"AppBundle\Entity\Award";s:22:"AppBundle\Entity\Award";s:34:"AppBundle\Entity\AccessRestriction";s:34:"AppBundle\Entity\AccessRestriction";s:39:"AppBundle\Entity\DataCollectionStandard";s:39:"AppBundle\Entity\DataCollectionStandard";s:30:"AppBundle\Entity\SubjectGender";s:30:"AppBundle\Entity\SubjectGender";s:37:"AppBundle\Entity\SubjectPopulationAge";s:37:"AppBundle\Entity\SubjectPopulationAge";s:25:"AppBundle\Entity\DataType";s:25:"AppBundle\Entity\DataType";s:38:"AppBundle\Entity\SubjectGeographicArea";s:38:"AppBundle\Entity\SubjectGeographicArea";s:44:"AppBundle\Entity\SubjectGeographicAreaDetail";s:44:"AppBundle\Entity\SubjectGeographicAreaDetail";s:30:"AppBundle\Entity\SubjectDomain";s:30:"AppBundle\Entity\SubjectDomain";s:28:"AppBundle\Entity\Publication";s:28:"AppBundle\Entity\Publication";s:31:"AppBundle\Entity\SubjectKeyword";s:31:"AppBundle\Entity\SubjectKeyword";s:26:"AppBundle\Entity\StudyType";s:26:"AppBundle\Entity\StudyType";s:26:"AppBundle\Entity\Publisher";s:26:"AppBundle\Entity\Publisher";s:23:"AppBundle\Entity\Person";s:23:"AppBundle\Entity\Person";s:32:"AppBundle\Entity\RelatedSoftware";s:32:"AppBundle\Entity\RelatedSoftware";s:33:"AppBundle\Entity\RelatedEquipment";s:33:"AppBundle\Entity\RelatedEquipment";s:31:"AppBundle\Entity\SubjectOfStudy";s:31:"AppBundle\Entity\SubjectOfStudy";s:34:"AppBundle\Entity\PersonAssociation";s:34:"AppBundle\Entity\PersonAssociation";s:29:"AppBundle\Entity\DataLocation";s:29:"AppBundle\Entity\DataLocation";s:30:"AppBundle\Entity\OtherResource";s:30:"AppBundle\Entity\OtherResource";s:38:"AppBundle\Entity\DatasetAlternateTitle";s:38:"AppBundle\Entity\DatasetAlternateTitle";s:36:"AppBundle\Entity\DatasetRelationship";s:36:"AppBundle\Entity\DatasetRelationship";s:28:"AppBundle\Entity\DatasetEdit";s:28:"AppBundle\Entity\DatasetEdit";}}s:6:"errors";a:0:{}s:6:"caches";a:4:{s:7:"enabled";b:0;s:11:"log_enabled";b:0;s:6:"counts";a:3:{s:4:"puts";i:0;s:4:"hits";i:0;s:6:"misses";i:0;}s:7:"regions";a:3:{s:4:"puts";a:0:{}s:4:"hits";a:0:{}s:6:"misses";a:0:{}}}}}s:6:"config";C:62:"Symfony\Component\HttpKernel\DataCollector\ConfigDataCollector":1318:{a:17:{s:8:"app_name";N;s:11:"app_version";N;s:5:"token";s:6:"e4856f";s:15:"symfony_version";s:6:"2.8.51";s:13:"symfony_state";s:3:"eol";s:4:"name";s:3:"app";s:3:"env";s:4:"prod";s:5:"debug";b:1;s:11:"php_version";s:24:"7.0.33-0ubuntu0.16.04.16";s:14:"xdebug_enabled";b:0;s:14:"eaccel_enabled";b:0;s:11:"apc_enabled";b:1;s:14:"xcache_enabled";b:0;s:16:"wincache_enabled";b:0;s:20:"zend_opcache_enabled";b:1;s:7:"bundles";a:9:{s:15:"FrameworkBundle";s:84:"/var/www/html/data-catalog/vendor/symfony/symfony/src/Symfony/Bundle/FrameworkBundle";s:14:"SecurityBundle";s:83:"/var/www/html/data-catalog/vendor/symfony/symfony/src/Symfony/Bundle/SecurityBundle";s:10:"TwigBundle";s:79:"/var/www/html/data-catalog/vendor/symfony/symfony/src/Symfony/Bundle/TwigBundle";s:13:"MonologBundle";s:56:"/var/www/html/data-catalog/vendor/symfony/monolog-bundle";s:17:"SwiftmailerBundle";s:60:"/var/www/html/data-catalog/vendor/symfony/swiftmailer-bundle";s:13:"AsseticBundle";s:56:"/var/www/html/data-catalog/vendor/symfony/assetic-bundle";s:14:"DoctrineBundle";s:58:"/var/www/html/data-catalog/vendor/doctrine/doctrine-bundle";s:26:"SensioFrameworkExtraBundle";s:63:"/var/www/html/data-catalog/vendor/sensio/framework-extra-bundle";s:9:"AppBundle";s:40:"/var/www/html/data-catalog/src/AppBundle";}s:9:"sapi_name";s:14:"apache2handler";}}}s:2:"ip";s:14:"18.216.167.229";s:6:"method";s:3:"GET";s:3:"url";s:76:"https://datacatalog.library.wayne.edu/dataset/covid-19-open-research-dataset";s:4:"time";i:1734840912;}')
    in vendor/symfony/symfony/src/Symfony/Component/HttpKernel/Profiler/FileProfilerStorage.php at line 167  +
  4. at FileProfilerStorage ->write (object(Profile))
    in vendor/symfony/symfony/src/Symfony/Component/HttpKernel/Profiler/Profiler.php at line 104  +
  5. at Profiler ->saveProfile (object(Profile))
    in vendor/symfony/symfony/src/Symfony/Component/HttpKernel/EventListener/ProfilerListener.php at line 152  +
  6. at ProfilerListener ->onKernelTerminate (object(PostResponseEvent), 'kernel.terminate', object(TraceableEventDispatcher))
    in vendor/symfony/symfony/src/Symfony/Component/EventDispatcher/Debug/WrappedListener.php at line 61  +
  7. at WrappedListener ->__invoke (object(PostResponseEvent), 'kernel.terminate', object(ContainerAwareEventDispatcher))
    in app/cache/prod/classes.php at line 1886  +
  8. at EventDispatcher ->doDispatch (array(object(WrappedListener), object(WrappedListener)), 'kernel.terminate', object(PostResponseEvent))
    in app/cache/prod/classes.php at line 1801  +
  9. at EventDispatcher ->dispatch ('kernel.terminate', object(PostResponseEvent))
    in vendor/symfony/symfony/src/Symfony/Component/EventDispatcher/Debug/TraceableEventDispatcher.php at line 133  +
  10. at TraceableEventDispatcher ->dispatch ('kernel.terminate', object(PostResponseEvent))
    in app/bootstrap.php.cache at line 3248  +
  11. at HttpKernel ->terminate (object(Request), object(Response))
    in app/bootstrap.php.cache at line 2574  +
  12. at Kernel ->terminate (object(Request), object(Response))
    in vendor/symfony/symfony/src/Symfony/Component/HttpKernel/HttpCache/HttpCache.php at line 241  +
  13. at HttpCache ->terminate (object(Request), object(Response))
    in web/app.php at line 33  +

Logs  -

1 error
  1. INFO - Calling the AppKernel::init() method is deprecated since Symfony 2.3 and will be removed in 3.0. Move your logic to the constructor method instead.
  2. INFO - The Symfony\Component\HttpKernel\Kernel::init method is deprecated since Symfony 2.3 and will be removed in 3.0. Move your logic to the constructor method instead.
  3. INFO - Matched route "view_dataset".
  4. INFO - Populated the TokenStorage with an anonymous Token.
  5. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\DebugHandlersListener::configure".
  6. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\ProfilerListener::onKernelRequest".
  7. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\ValidateRequestListener::onKernelRequest".
  8. DEBUG - Notified event "kernel.request" to listener "Symfony\Bundle\FrameworkBundle\EventListener\SessionListener::onKernelRequest".
  9. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\FragmentListener::onKernelRequest".
  10. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\RouterListener::onKernelRequest".
  11. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\LocaleListener::onKernelRequest".
  12. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\TranslatorListener::onKernelRequest".
  13. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\Security\Http\Firewall::onKernelRequest".
  14. DEBUG - Notified event "kernel.request" to listener "Symfony\Bundle\AsseticBundle\EventListener\RequestListener::onKernelRequest".
  15. DEBUG - Notified event "kernel.controller" to listener "Symfony\Bundle\FrameworkBundle\DataCollector\RouterDataCollector::onKernelController".
  16. DEBUG - Notified event "kernel.controller" to listener "Symfony\Component\HttpKernel\DataCollector\RequestDataCollector::onKernelController".
  17. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\ControllerListener::onKernelController".
  18. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\ParamConverterListener::onKernelController".
  19. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\HttpCacheListener::onKernelController".
  20. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\SecurityListener::onKernelController".
  21. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\TemplateListener::onKernelController".
  22. DEBUG - SELECT t0.dataset_uid AS dataset_uid_1, t0.origin AS origin_2, t0.title AS title_3, t0.published AS published_4, t0.slug AS slug_5, t0.description AS description_6, t0.subject_start_date AS subject_start_date_7, t0.subject_end_date AS subject_end_date_8, t0.dataset_size AS dataset_size_9, t0.subscriber AS subscriber_10, t0.access_instructions AS access_instructions_11, t0.licensing_details AS licensing_details_12, t0.license_expiration_date AS license_expiration_date_13, t0.erd_url AS erd_url_14, t0.library_catalog_url AS library_catalog_url_15, t0.funder_category AS funder_category_16, t0.pubmed_search AS pubmed_search_17, t0.date_added AS date_added_18, t0.date_updated AS date_updated_19, t0.date_archived AS date_archived_20, t0.data_location_description AS data_location_description_21 FROM datasets t0 WHERE t0.slug = ? LIMIT 1
  23. INFO - Using the "Twig_Extension_GlobalsInterface" class is deprecated since Twig version 2.7, use "Twig\Extension\GlobalsInterface" instead.
  24. DEBUG - SELECT t0.alternate_title_id AS alternate_title_id_1, t0.alt_title AS alt_title_2, t0.datasets_dataset_uid AS datasets_dataset_uid_3 FROM dataset_alternate_titles t0 WHERE t0.datasets_dataset_uid = ?
  25. DEBUG - SELECT t0.keyword_id AS keyword_id_1, t0.keyword AS keyword_2, t0.slug AS slug_3 FROM subject_keywords t0 INNER JOIN datasets_keywords ON t0.keyword_id = datasets_keywords.keyword_id WHERE datasets_keywords.dataset_uid = ? ORDER BY t0.keyword ASC
  26. DEBUG - SELECT t0.person_association_id AS person_association_id_1, t0.role AS role_2, t0.is_corresponding_author AS is_corresponding_author_3, t0.display_order AS display_order_4, t0.person_id AS person_id_5, t0.datasets_dataset_uid AS datasets_dataset_uid_6 FROM person_associations t0 WHERE t0.datasets_dataset_uid = ? ORDER BY t0.display_order ASC
  27. DEBUG - SELECT t0.publication_id AS publication_id_1, t0.citation AS citation_2, t0.url AS url_3, t0.doi AS doi_4, t0.slug AS slug_5 FROM publications t0 INNER JOIN datasets_publications ON t0.publication_id = datasets_publications.publication_id WHERE datasets_publications.dataset_uid = ?
  28. DEBUG - SELECT t0.data_format_id AS data_format_id_1, t0.format AS format_2, t0.slug AS slug_3 FROM dataset_formats t0 INNER JOIN datasets_dataset_formats ON t0.data_format_id = datasets_dataset_formats.data_format_id WHERE datasets_dataset_formats.dataset_uid = ?
  29. DEBUG - SELECT t0.publisher_id AS publisher_id_1, t0.publisher_name AS publisher_name_2, t0.slug AS slug_3, t0.publisher_url AS publisher_url_4 FROM publishers t0 INNER JOIN datasets_publishers ON t0.publisher_id = datasets_publishers.publisher_id WHERE datasets_publishers.dataset_uid = ? ORDER BY t0.publisher_name ASC
  30. DEBUG - SELECT t0.location_id AS location_id_1, t0.data_location AS data_location_2, t0.location_content AS location_content_3, t0.data_access_url AS data_access_url_4, t0.accession_number AS accession_number_5, t0.datasets_dataset_uid AS datasets_dataset_uid_6 FROM data_locations t0 WHERE t0.datasets_dataset_uid = ?
  31. DEBUG - SELECT t0.person_id AS person_id_1, t0.full_name AS full_name_2, t0.slug AS slug_3, t0.last_name AS last_name_4, t0.first_name AS first_name_5, t0.kid AS kid_6, t0.orcid_id AS orcid_id_7, t0.bio_url AS bio_url_8, t0.email AS email_9 FROM person t0 INNER JOIN datasets_corresponding_authors ON t0.person_id = datasets_corresponding_authors.person_id WHERE datasets_corresponding_authors.dataset_uid = ? ORDER BY t0.full_name ASC
  32. INFO - Calling the AppKernel::init() method is deprecated since Symfony 2.3 and will be removed in 3.0. Move your logic to the constructor method instead.
  33. INFO - The Symfony\Component\HttpKernel\Kernel::init method is deprecated since Symfony 2.3 and will be removed in 3.0. Move your logic to the constructor method instead.
  34. DEBUG - SELECT t0.area_detail_id AS area_detail_id_1, t0.geographic_area_detail_name AS geographic_area_detail_name_2, t0.geographic_area_detail_authority AS geographic_area_detail_authority_3, t0.slug AS slug_4 FROM subject_geographic_area_details t0 INNER JOIN datasets_geographic_area_details ON t0.area_detail_id = datasets_geographic_area_details.area_detail_id WHERE datasets_geographic_area_details.dataset_uid = ? ORDER BY t0.geographic_area_detail_name ASC
  35. DEBUG - SELECT t0.person_id AS person_id_1, t0.full_name AS full_name_2, t0.slug AS slug_3, t0.last_name AS last_name_4, t0.first_name AS first_name_5, t0.kid AS kid_6, t0.orcid_id AS orcid_id_7, t0.bio_url AS bio_url_8, t0.email AS email_9 FROM person t0 INNER JOIN datasets_experts ON t0.person_id = datasets_experts.person_id WHERE datasets_experts.dataset_uid = ? ORDER BY t0.full_name ASC
  36. DEBUG - SELECT t0.subject_of_study_id AS subject_of_study_id_1, t0.subject_of_study AS subject_of_study_2, t0.species AS species_3, t0.slug AS slug_4 FROM subject_of_study t0 INNER JOIN datasets_subject_of_study ON t0.subject_of_study_id = datasets_subject_of_study.subject_of_study_id WHERE datasets_subject_of_study.dataset_uid = ? ORDER BY t0.subject_of_study ASC
  37. DEBUG - SELECT t0.subject_domain_id AS subject_domain_id_1, t0.subject_domain AS subject_domain_2, t0.mesh_code AS mesh_code_3, t0.slug AS slug_4 FROM subject_domains t0 INNER JOIN datasets_subject_domains ON t0.subject_domain_id = datasets_subject_domains.subject_domain_id WHERE datasets_subject_domains.dataset_uid = ? ORDER BY t0.subject_domain ASC
  38. DEBUG - SELECT t0.pop_age_id AS pop_age_id_1, t0.age_group AS age_group_2, t0.slug AS slug_3 FROM subject_population_ages t0 INNER JOIN datasets_ages ON t0.pop_age_id = datasets_ages.pop_age_id WHERE datasets_ages.dataset_uid = ?
  39. DEBUG - SELECT t0.gender_id AS gender_id_1, t0.subject_gender AS subject_gender_2, t0.slug AS slug_3 FROM subject_genders t0 INNER JOIN datasets_genders ON t0.gender_id = datasets_genders.gender_id WHERE datasets_genders.dataset_uid = ?
  40. DEBUG - SELECT t0.restriction_id AS restriction_id_1, t0.restriction AS restriction_2, t0.slug AS slug_3 FROM access_restrictions t0 INNER JOIN datasets_access_restrictions ON t0.restriction_id = datasets_access_restrictions.restriction_id WHERE datasets_access_restrictions.dataset_uid = ?
  41. DEBUG - SELECT t0.data_type_id AS data_type_id_1, t0.data_type AS data_type_2, t0.slug AS slug_3 FROM data_types t0 INNER JOIN datasets_data_types ON t0.data_type_id = datasets_data_types.data_type_id WHERE datasets_data_types.dataset_uid = ?
  42. DEBUG - SELECT t0.related_equipment_id AS related_equipment_id_1, t0.related_equipment AS related_equipment_2, t0.equipment_description AS equipment_description_3, t0.equipment_url AS equipment_url_4, t0.slug AS slug_5 FROM related_equipment t0 INNER JOIN datasets_related_equipment ON t0.related_equipment_id = datasets_related_equipment.related_equipment_id WHERE datasets_related_equipment.dataset_uid = ? ORDER BY t0.related_equipment ASC
  43. DEBUG - SELECT t0.related_software_id AS related_software_id_1, t0.software_name AS software_name_2, t0.software_description AS software_description_3, t0.software_url AS software_url_4, t0.slug AS slug_5 FROM related_software t0 INNER JOIN datasets_related_software ON t0.related_software_id = datasets_related_software.related_software_id WHERE datasets_related_software.dataset_uid = ? ORDER BY t0.software_name ASC
  44. DEBUG - SELECT t0.study_type_id AS study_type_id_1, t0.study_type AS study_type_2, t0.slug AS slug_3 FROM study_types t0 INNER JOIN datasets_study_types ON t0.study_type_id = datasets_study_types.study_type_id WHERE datasets_study_types.dataset_uid = ? ORDER BY t0.study_type ASC
  45. DEBUG - SELECT t0.other_resource_id AS other_resource_id_1, t0.resource_name AS resource_name_2, t0.resource_description AS resource_description_3, t0.resource_url AS resource_url_4, t0.datasets_dataset_uid AS datasets_dataset_uid_5 FROM other_resources t0 WHERE t0.datasets_dataset_uid = ?
  46. DEBUG - SELECT t0.relationship_id AS relationship_id_1, t0.relationship_attributes AS relationship_attributes_2, t0.relationship_notes AS relationship_notes_3, t0.related_dataset_uid AS related_dataset_uid_4, t0.parent_dataset_uid AS parent_dataset_uid_5 FROM dataset_relationships t0 WHERE t0.parent_dataset_uid = ?
  47. DEBUG - Notified event "kernel.response" to listener "Symfony\Component\HttpKernel\EventListener\ResponseListener::onKernelResponse".
  48. DEBUG - Notified event "kernel.response" to listener "Symfony\Component\Security\Http\RememberMe\ResponseListener::onKernelResponse".
  49. DEBUG - Notified event "kernel.response" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\HttpCacheListener::onKernelResponse".
  50. DEBUG - Notified event "kernel.response" to listener "Symfony\Component\HttpKernel\EventListener\ProfilerListener::onKernelResponse".
  51. DEBUG - Notified event "kernel.response" to listener "Symfony\Component\HttpKernel\EventListener\SaveSessionListener::onKernelResponse".
  52. DEBUG - Notified event "kernel.response" to listener "Symfony\Component\HttpKernel\EventListener\StreamedResponseListener::onKernelResponse".
  53. DEBUG - Notified event "kernel.finish_request" to listener "Symfony\Component\HttpKernel\EventListener\LocaleListener::onKernelFinishRequest".
  54. DEBUG - Notified event "kernel.finish_request" to listener "Symfony\Component\HttpKernel\EventListener\TranslatorListener::onKernelFinishRequest".
  55. DEBUG - Notified event "kernel.finish_request" to listener "Symfony\Component\HttpKernel\EventListener\RouterListener::onKernelFinishRequest".
  56. DEBUG - Notified event "kernel.finish_request" to listener "Symfony\Component\Security\Http\Firewall::onKernelFinishRequest".
  57. CRITICAL - Uncaught PHP Exception Symfony\Component\Debug\Exception\ContextErrorException: "Warning: file_put_contents(): Only 0 of 114502 bytes written, possibly out of free disk space" at /var/www/html/data-catalog/vendor/symfony/symfony/src/Symfony/Component/HttpKernel/Profiler/FileProfilerStorage.php line 167
  58. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\DebugHandlersListener::configure".
  59. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\ProfilerListener::onKernelRequest".
  60. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\ValidateRequestListener::onKernelRequest".
  61. DEBUG - Notified event "kernel.request" to listener "Symfony\Bundle\FrameworkBundle\EventListener\SessionListener::onKernelRequest".
  62. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\FragmentListener::onKernelRequest".
  63. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\RouterListener::onKernelRequest".
  64. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\LocaleListener::onKernelRequest".
  65. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\HttpKernel\EventListener\TranslatorListener::onKernelRequest".
  66. DEBUG - Notified event "kernel.request" to listener "Symfony\Component\Security\Http\Firewall::onKernelRequest".
  67. DEBUG - Notified event "kernel.request" to listener "Symfony\Bundle\AsseticBundle\EventListener\RequestListener::onKernelRequest".
  68. DEBUG - Notified event "kernel.controller" to listener "Symfony\Bundle\FrameworkBundle\DataCollector\RouterDataCollector::onKernelController".
  69. DEBUG - Notified event "kernel.controller" to listener "Symfony\Component\HttpKernel\DataCollector\RequestDataCollector::onKernelController".
  70. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\ControllerListener::onKernelController".
  71. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\ParamConverterListener::onKernelController".
  72. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\HttpCacheListener::onKernelController".
  73. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\SecurityListener::onKernelController".
  74. DEBUG - Notified event "kernel.controller" to listener "Sensio\Bundle\FrameworkExtraBundle\EventListener\TemplateListener::onKernelController".

Stack Trace (Plain Text)  +